PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G022200.4.p
Common NamePRUPE_ppa006295mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 418aa    MW: 45611.3 Da    PI: 7.1425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G022200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-13352397655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Prupe.6G022200.4.p 352 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 397
                         689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16349408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-13350401No hitNo description
Gene3DG3DSA:4.10.280.102.2E-15351407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-10352397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010119Biological Processregulation of stomatal movement
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MESDLQQHHH KPQQHMNSSL MRYRSAPSSY FANLDSDFCE PLFNRPSSPE TERIFARFLT  60
GEGGGNGDGG GGGTEETASH HKVTTQTNNQ QTQFMVPKVD NEAVVIQQQQ QSHLNNYSSV  120
SQGFYQSPSS KPPLPNQSLN SANEGAYSMG TSQLPSVKTG GVTNSNLIRH SSSPAGLFSH  180
MNIDGYAALR GMGNYGASNS TNEEASFSST SRLKNFSSGP PSTSGLMSPI AEIGNKRMRS  240
DNQDSRGFGD GSGNNYVTGF PIDSWDDSAM MSGDITRSTS FREDDIKAFT GLSPSETQDV  300
EAGNRPPTLL AHHLSLPKTS AEMAAIEKFM QFQDSVPCKI RAKRGCATHP RSIAERVRRT  360
RISERMRKLQ ELVPNMDKQT NTADMLDLAV EYIKDLQTQV QTLSDNRAKC TCSSKPQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205257.10.0hypothetical protein PRUPE_ppa006295mg
TrEMBLM5VZC10.0M5VZC1_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s22290.11e-144(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-70bHLH family protein